Nanome
Nanome provides a collaborative XR and web platform for molecular visualization and drug discovery, augmented by the MARA agentic AI co-pilot, serving pharmaceutical R&D teams and academic research institutions globally.
- Company typePrivate
- Founded2016
- HeadquartersSan Diego, United States
- Headcount11–50
- GTM typeB2B
- OfferingSoftware
What Nanome does
Nanome, founded in 2016 and headquartered in San Diego, develops a collaborative XR (VR/AR) molecular visualization platform augmented by an agentic AI co-pilot called MARA. The core platform enables scientists to load, manipulate, and discuss molecular structures in real-time shared virtual spaces accessible via web browser or XR headsets (Meta Quest Pro, Apple Vision Pro); MARA adds a natural-language interface to 300+ scientific tools spanning docking, structure prediction, cheminformatics, genomics, and materials science. The 2025 launch of the Nanome Agents platform extends this into GPU-backed autonomous scientific workflows (10+ built-in agents, 50+ tools) including protein prediction (Boltz, ESMFold), docking (AutoDock Vina, Smina, DiffDock), sequence design (ProteinMPNN), and de novo binder design.
Nanome serves three primary customer segments: pharmaceutical and biotechnology R&D teams (named customers include Genentech, Novartis, Nimbus, Insilico Medicine, LifeArc, Promega), academic research and education (UC San Diego, University of Sydney, Seton Hall), and computational chemists/bioinformaticians. Revenue is generated through tiered software subscriptions (free Starter, $20.83/month or $250/year Academic Personal, $50/year per-seat Academic Department with 50-seat minimums, and custom-priced Commercial Cloud and Enterprise tiers with on-prem options) plus a credits-based usage layer for AI tool calls and agentic operations. Go-to-market combines enterprise field sales for pharma/biotech with a product-led growth motion through a self-serve free tier, supplemented by a regional channel partnership with Fujitsu for Japan and MDM partners (ManageXR, ArborXR) for XR fleet deployment in education.
Nanome firmographics
Firmographics- Name
- Nanome
- Legal name
- Nanome Inc.
- Website
- https://nanome.ai
- Company type
- Private
- Founded year
- 2016
- Operating status
- Operating
- Headcount range
- 11–50 employees
- Short description
- Nanome provides a collaborative XR and web platform for molecular visualization and drug discovery, augmented by the MARA agentic AI co-pilot, serving pharmaceutical R&D teams and academic research institutions globally.
- Ownership category
- akta.pro rank
Nanome industry classification
Industry- Product category
- Scientific Molecular Visualization Software
- NAICS
- Software Publishers (5132), Computer Systems Design and Related Services (54151)
- SIC
- Services-Computer Integrated Systems Design (7373)
- akta.pro primary industry
- AI/ML Platforms for Drug Discovery & Experiment Optimization (HLAGAJAO)
- akta.pro secondary industries
- XR/AR/VR/MR Development Frameworks & Toolchains (MPAFAFAF), Metaverse & Social Virtual Worlds (BPAMAKAF), Digital Labs, Simulations & Virtual Practicals (Non-XR) (EDAFACAF)
Keywords
Where Nanome is headquartered
LocationHeadquarters
- HQ city
- San Diego
- HQ country
- United States
- HQ region
- North America
Offices1 record
Markets served
Nanome business model
Business model- GTM type
- B2B
- Offering type
- Software
- Cost components
- Technology or R&D, Personnel, Infrastructure, Marketing or Sales, Operations
Revenue model
- Software Licenses (Commercial): Annual or monthly subscriptions for commercial cloud and enterprise deployments. Cloud tier on single-tenant Nanome-hosted stack with premium support. Enterprise tier includes private cloud or on-prem deployment with custom development.
- Academic Licenses: Personal academic subscriptions at $250/year (Full seat) or free tier with limited features. Department licenses starting at $50/year for Full Web Seats with minimum 50 licenses.
- Credits System: Credits-based usage for tool calls, agentic operations, and MCP calls. Credits can be purchased with any seat type. Free tier includes 50 credits; paid tiers include 1000 credits/month.
- Professional Services: Implementation support included in department and enterprise tiers including syllabus assistance, course implementation, and deployment support.
Pricing tiers
| Model | Billing | Price |
|---|---|---|
| Freemium | Monthly | Free web-based molecular visualization for exploration |
| Subscription | Annual | Full web access with XR support for individual researchers |
| Subscription | Annual | Institutional deployment for academic labs and departments |
| Subscription | Multi-year contract | Single-tenant cloud deployment for commercial teams |
| Subscription | Multi-year contract | Private cloud or on-prem deployment with full customization |
Go-to-market motion2 records
Distribution channels5 records
Marketing channels6 records
Nanome product offering
Product offeringCore offering
Nanome develops and sells a collaborative extended reality (XR) molecular visualization platform that enables scientists to load, view, and manipulate 3D molecular structures in immersive VR/AR environments via web browsers or headsets such as Meta Quest Pro and Apple Vision Pro. The platform integrates MARA, an agentic AI co-pilot that provides a natural language interface to 300+ scientific tools for cheminformatics workflows, protein prediction, molecular docking, and antibody design. It is sold as commercial and academic subscriptions, with enterprise options for private cloud and on-prem deployment.
Product overview
Nanome is a collaborative XR platform for molecular visualization and drug discovery. The product portfolio consists of the core Nanome Platform (VR/AR molecular workspace), MARA (AI-powered scientific discovery co-pilot with natural language interface and 100+ tools), Nanome Agents (GPU-backed specialized scientific agents for prediction/docking/design), Nanome EDU (academic version), Nanome Classic (legacy version), Calcflow, and Matryx. Pricing tiers include Starter (free), Academic ($20.83-$250/yr), and Commercial Cloud/Enterprise. The platform supports small molecules, molecular glues, enzymes, antibodies, and MOFs across drug discovery modalities.
Differentiator
Problem solved
Functional benefit
Brands
- MARA: Molecular Analysis and Research Assistant - AI-powered scientific discovery co-pilot for cheminformatics and bioinformatics workflows
- EDU
- Classic
- Calcflow
- Matryx
Products and services
- Nanome Platform Collaborative XR (VR/AR) molecular visualization platform that enables scientists to load, view, and collaborate on molecular structures in 3D immersive environments, accessible via web browser or XR headsets including Meta Quest Pro and Apple Vision Pro. Used by pharmaceutical, biotech, academic, and government R&D teams for drug discovery, structural biology, and chemistry education.
- MARA (Molecular Analysis and Research Assistant) Agentic AI scientific co-pilot that gives scientists a natural language interface to more than 300 cheminformatics and bioinformatics tools, supporting tool creation, workflow automation, 2D sketching, SAR visualization, and integration with internal databases. Built for cheminformatics and bioinformatics teams at pharmaceutical, biotech, and research organizations.
- Nanome Agents Platform GPU-backed scientific agents platform that packages 10+ built-in agents and 50+ curated tools into specialized workflows for protein prediction, molecular docking, sequence design, electrostatics, and antibody design. Targets computational chemists and drug discovery teams that need orchestrated, automated scientific pipelines.
- Nanome EDU Education-focused version of the Nanome platform built for classroom and academic lab use, enabling teachers and students to collaboratively interact with molecular structures in VR. Used by universities such as UC San Diego, the University of Sydney, and Seton Hall University for structural biology and biochemistry courses.
- Nanome Classic Legacy version of the Nanome XR molecular visualization platform retained as a separate product line for users on prior-generation workflows.
- Calcflow VR-based mathematical and fluid dynamics visualization tool for computational chemistry education and calculations, distributed as part of Nanome's product family.
- Matryx VR-based platform for scientific collaboration and data visualization in molecular research, distributed as part of Nanome's product family.
Quantifiable outcome
- Students describe VR molecular visualization as most profound teaching experience in 30 years of education
- +1 more outcomes
Companies that use Nanome
Customer profileNamed customers13 records
Segments5 records
Ideal customer profiles3 records
Nanome technology and API
TechnologyTechnology focussed Yes
API detail
- Has API
- Yes
- API docs
- API detail
Core technology
AI maturity
App detail
Integration18 records
AI capability10 records
Feature5 records
Nanome partnerships and signals
Strategic signalPartnerships
15 partnerships are on record, tiered core.
- Schrödinger LiveDesigncoreIntegration enabling users to pull Live Reports into XR and iterate on molecular designs spatially within Nanome workspace
- CDD VaultcoreIntegration allowing users to query saved searches and find similar molecules by SMILES directly within the platform
- OpenEye / CadencecoreIntegration for FastROCS shape search, MD trajectory parsing, and cryptic pocket evaluation
- BoltzcoreBiomolecular structure prediction and analysis tools integrated into the scientific agents platform
- OpenFold ConsortiumcoreNanome is an OpenFold Consortium member, providing open-source protein structure prediction workflows
- RCSB PDBcoreDirect integration with RCSB Protein Data Bank for structure downloads and retrieval
- AlphaFold DBcoreIntegration for accessing AlphaFold predicted protein structures directly within the platform
- ChEMBLcoreIntegration for querying ChEMBL database for bioactivity data and molecule properties
- UniProtcoreIntegration for accessing UniProt protein sequence and functional information
- Materials ProjectcoreIntegration for downloading and analyzing materials science data from the Materials Project database
- AutoDock VinacoreIntegrated molecular docking tool for protein-ligand binding prediction
- DiffDockcoreIntegration for Diffusion models for molecular docking predictions
- ESMFoldcoreIntegration for protein structure prediction using ESMFold models
- Fujitsu (Japan)coreRegional distribution partner for Japan market handling sales, support, and implementation for Japanese customers
- Claude / AnthropiccorePublished Claude Code skill and MCP server enabling AI coding agents to access Nanome's MARA tool library for automated scientific workflows
Scale indicators5 records
Recent moves6 records
Expansion highlights6 records
Nanome competitors and assessment
Company assessmentBroad incumbents
- Schrödinger: Established computational chemistry and molecular simulation platform (LiveDesign, Maestro) widely used in pharma R&D. Direct overlap with Nanome's cheminformatics and visualization capabilities; Schrödinger is also a named integration partner, illustrating the coopetition dynamic.
- BIOVIA (Dassault Systèmes): Discovery Studio and broader BIOVIA portfolio provide molecular modeling, simulation, and scientific data management to enterprise pharma — a large, established incumbent against which Nanome competes for visualization and design-tooling budgets.
- Dotmatics: Enterprise scientific R&D platform spanning data, workflows, and analytics for pharma/biotech. Competes for the same enterprise informatics budget Nanome targets, with broader scope but less spatial/visualization focus.
Direct peers
- Benchling: Cloud R&D platform for biotech covering molecular biology, registry, and workflow tooling. Comparable in targeting biotech R&D teams with a modern software stack, though focused on lab data rather than spatial XR visualization.
- Collaborative Drug Discovery (CDD Vault): Drug discovery data management and collaboration platform used by pharma and academic researchers. Direct overlap with Nanome's collaboration and database-query capabilities; CDD Vault is also a named integration partner.
- OpenEye Scientific (Cadence): Molecular modeling and shape-search tools (FastROCS, OEChem) used in pharma drug discovery. Comparable scientific-tooling scope; OpenEye is a named Nanome integration partner and adjacent competitor in molecular analysis.
- Chemical Computing Group (MOE): Developer of the Molecular Operating Environment (MOE), a longstanding drug discovery platform for medicinal chemists. Competes directly for medicinal-chemist workflows and is also integrated with Nanome via MOE file import.
Emerging players
- Cresset: Computational chemistry software provider focused on ligand-based design and electrostatics. Comparable in targeting medicinal chemists with specialized scientific tools that overlap with several Nanome Agents capabilities.
- Insilico Medicine: AI-driven drug discovery company using generative models for target identification and molecular design. Overlaps in the AI-for-drug-discovery narrative; Insilico is also a named Nanome customer, illustrating dual customer-competitor dynamics.
Others
- Wolfram Research: Computational and visualization engine (Mathematica, Wolfram Alpha) widely used by scientists for symbolic and numerical computation. Adjacent in providing computational tooling that scientists could combine with or substitute for specialized cheminformatics platforms.
Market position
Strengths5 records
Weaknesses5 records
Competitive moat6 records
Key risks5 records
Key highlights6 records
Customer concentration
Nanome social profiles
Digital presenceNanome financial estimates
Financial estimateRevenue estimate
Valuation estimate
Nanome leadership team
Management profileNumber of profiles
Profiles4 records
Nanome funding detail
Funding detailFunding overview
Funding rounds9 records
Investors13 records
Funding detail is available on the Subscription and Enterprise plan.Contact sales →
Nanome M&A and investment
M&A and investmentM&A
Investments
M&A and investment is available on the Subscription and Enterprise plan.Contact sales →
Frequently asked questions about Nanome
What does Nanome do?
Nanome develops and sells a collaborative extended reality (XR) molecular visualization platform that enables scientists to load, view, and manipulate 3D molecular structures in immersive VR/AR environments via web browsers or headsets such as Meta Quest Pro and Apple Vision Pro. The platform integrates MARA, an agentic AI co-pilot that provides a natural language interface to 300+ scientific tools for cheminformatics workflows, protein prediction, molecular docking, and antibody design. It is sold as commercial and academic subscriptions, with enterprise options for private cloud and on-prem deployment.
Is Nanome a public or private company?
Nanome is a private company. It is classified as venture growth investor backed and is currently operating.
When was Nanome founded?
Nanome was founded in 2016. It employs 11 to 50 people.
Where is Nanome based?
Nanome is headquartered in San Diego, United States, in the North America region.
How does Nanome make money?
Four revenue lines are on record. Software Licenses (Commercial) is the primary driver. The others are academic Licenses, credits System and professional Services.
Who are Nanome's main competitors?
Broad incumbents on record are Schrödinger, BIOVIA (Dassault Systèmes) and Dotmatics. Direct peers are Benchling, Collaborative Drug Discovery (CDD Vault), OpenEye Scientific (Cadence) and Chemical Computing Group (MOE). Emerging players are Cresset and Insilico Medicine. Wolfram Research is listed as an others.
Does Nanome have an API?
Yes. Every MARA tool is a REST endpoint. Drop Nanome's capabilities into own pipelines, CI/CD, and automation infrastructure. Jupyter notebook integration available via Python package. MCP server is offered for AI agent integration. Developer documentation is at docs.nanome.ai.
What industry is Nanome in?
Nanome's product category is Scientific Molecular Visualization Software. Its primary akta.pro industry code is HLAGAJAO, AI/ML Platforms for Drug Discovery & Experiment Optimization, with a secondary code of MPAFAFAF, XR/AR/VR/MR Development Frameworks & Toolchains. Its NAICS code is 5132 and its SIC code is 7373.