One Codex
- Company typePrivate
- Founded2015
- HeadquartersSan Francisco, United States
- Headcount1–10
- GTM typeB2B
- OfferingSoftware
One Codex firmographics
Firmographics- Name
- One Codex
- Legal name
- One Codex, Inc.
- Website
- https://onecodex.com
- Company type
- Private
- Founded year
- 2015
- Operating status
- Operating
- Headcount range
- 1–10 employees
- Ownership category
- akta.pro rank
One Codex industry classification
Industry- Product category
- Microbial Genomics Software
- NAICS
- Software Publishers (513210), Medical Laboratories (621511), Medical and Diagnostic Laboratories (6215)
- SIC
- Laboratory Analytical Instruments (3826), Services-Medical Laboratories (8071), Services-Prepackaged Software (7372)
- akta.pro primary industry
- Microbiome Analytics, Sequencing & Bioinformatics Platforms (HLAAAFAI)
- akta.pro secondary industries
- Molecular Biology & Genomics Instruments (PCR/qPCR, Sequencing, Microarrays) (HLAGAIAF), Multiplex & High-Throughput Diagnostics Platforms (microarrays, digital PCR, lab automation-enabled assays) (HLAAALAL), Microbiology & Infectious Disease Diagnostics (Culture/ID/AST) (HLAHAAAC), Microbiology & Infectious Disease Diagnostics (culture, rapid antigen, syndromic panels) (HLAAALAC)
Keywords
Where One Codex is headquartered
LocationHeadquarters
- HQ city
- San Francisco
- HQ country
- United States
- HQ region
- North America
Offices1 record
Markets served
One Codex business model
Business model- GTM type
- B2B
- Offering type
- Software
- Cost components
- Technology or R&D, Infrastructure, Personnel, Supply Chain, Marketing or Sales, Operations
Revenue model
- Software Platform Subscription: Tiered SaaS subscription model with Academic tier providing 25 free analyses and Commercial tier offering custom analyses, audit logging, HIPAA compliance, and premium support with SLA. Commercial customers contact sales ([email protected]) for pricing.
- Microbiome Sequencing Services: High-quality DNA extraction, library preparation, and shotgun sequencing for gut microbiome samples. Offered as an add-on to the software platform with quote-based pricing.
Pricing tiers
| Model | Billing | Price |
|---|---|---|
| Freemium | Others | Free tier with 25 analyses for academic researchers |
| Subscription | Annual | Enterprise tier for commercial and clinical use |
Go-to-market motion2 records
Distribution channels4 records
Marketing channels7 records
One Codex product offering
Product offeringCore offering
One Codex sells a cloud-based SaaS platform for applied microbial genomics that ingests next-generation sequencing data (FASTA/FASTQ), classifies it against the world's largest microbial reference database (80,000+ genomes), and returns reproducible taxonomic, functional, AMR, MLST, and alignment analyses. It offers tiered subscriptions (Academic freemium with 25 free analyses; Commercial with HIPAA, audit logging, custom analyses, and SLA) plus an end-to-end gut microbiome sequencing service (DNA extraction, library prep, shotgun sequencing) as an add-on.
Product overview
One Codex offers a unified SaaS platform for microbiome and microbial genomics analysis, comprising a web-based Platform with an intuitive interface, a RESTful API for programmatic access, an embedded Jupyter Notebooks environment for custom analyses, and an end-to-end Microbiome Sequencing service. The core platform is powered by the Genome Library containing 80,000+ microbial genomes and supports multiple analysis modalities including taxonomic classification, functional analysis (via Humann3), whole-genome alignments, AMR panels, and MLST typing. Visualization capabilities include Custom Plots and Quick Compare for comparing samples. The platform offers tiered pricing for Academic (free with limited analyses) and Commercial (full features with HIPAA compliance and SLA) segments.
Differentiator
Problem solved
Functional benefit
Products and services
- One Codex Platform Web-based SaaS platform for secure storage, sharing, and reproducible analysis of microbial next-generation sequencing data. Provides an intuitive interface for bench scientists and computational biologists and underpins all other One Codex products and services.
- Genome Library Microbial reference database product enabling customers to build a single source of truth for their microbial assets, supporting taxonomic classification and identification across diverse microbial domains.
- Microbiome Sequencing Service End-to-end sequencing service providing high-quality DNA extraction, library preparation, and shotgun sequencing for gut microbiome samples, including sample collection kits, processing, and analysis with results delivered in as little as two weeks. Offered as an add-on to the software platform with quote-based pricing.
- One Codex API RESTful JSON API that powers the One Codex web application and enables programmatic upload of NGS data (FASTA/FASTQ), automatic metagenomic classification, analysis initiation, and result retrieval. Self-described using JSON Schema with API key or OAuth authentication.
- Targeted Loci Database Reference database product for 16S, 18S, and ITS amplicon sequencing analysis, enabling high-quality reference-based analysis of marker gene studies for cost-effective broad community surveys across large sample sets.
Quantifiable outcome
- Sequencing results delivered in as little as two weeks
- +1 more outcomes
Companies that use One Codex
Customer profileNamed customers3 records
Segments3 records
Ideal customer profiles3 records
One Codex technology and API
TechnologyTechnology focussed Yes
API detail
- Has API
- Yes
- API docs
- API detail
Core technology
AI maturity
App detail
Integration1 record
AI capability4 records
Feature9 records
One Codex partnerships and signals
Strategic signalPartnerships
One partnership is on record.
- Illumina BaseSpacecorePlatform integration with Illumina BaseSpace sequencing platform enabling seamless data connectivity between Illumina sequencers and One Codex analysis tools.
Scale indicators3 records
Recent moves6 records
Expansion highlights5 records
One Codex competitors and assessment
Company assessmentDirect peers
- CosmosID: Commercial microbiome analytics platform with a curated reference database and pathogen ID/AMR capabilities. Closest direct competitor to One Codex in metagenomic classification-as-a-service.
- IDbyDNA (acquired by Illumina): Clinical metagenomics platform for infectious disease diagnostics with comparable AMR and pathogen detection capabilities; now part of Illumina, making it both peer and ecosystem risk.
- Velsera (formerly Seven Bridges Genomics): Bioinformatics platform offering secondary/tertiary analysis pipelines and workflow tools for NGS data, with comparable enterprise API and workflow capabilities for genomics customers.
- Microbiome Insights: Contract microbiome sequencing and bioinformatic analysis provider, competing directly with One Codex's add-on sequencing service and analysis offering for academic and industry researchers.
- Diversigen (now part of OraSure Technologies): Microbiome sequencing and analysis services for academic, biotech, and pharma customers — overlapping with One Codex's add-on sequencing services and analytical offerings.
- EzBiome: Microbiome analytics and clinical infectious disease diagnostics using shotgun metagenomics, comparable in targeting both research and clinical lab customers.
Broad incumbents
- DNAnexus: Cloud genomics data platform serving clinical and research customers with API-first architecture, similar to One Codex's developer-oriented model but across broader genomic use cases.
- Qiagen Digital Insights (CLC bio): Qiagen's bioinformatics portfolio includes CLC Genomics Workbench and microbial analysis modules, competing in bench-scientist-friendly sequence analysis for clinical and research labs.
- Illumina DRAGEN: Illumina's secondary and tertiary analysis suite, increasingly bundling metagenomics capabilities that overlap with One Codex's classification workflows and BaseSpace integration path.
Emerging players
- Pattern Bioscience: Single-cell microbiology platform for rapid pathogen ID and antimicrobial susceptibility, intersecting with One Codex's clinical infectious disease use cases via a different detection modality.
Market position
Strengths5 records
Weaknesses5 records
Competitive moat4 records
Key risks5 records
Key highlights7 records
Customer concentration
One Codex social profiles
Digital presenceOne Codex financial estimates
Financial estimateRevenue estimate
Valuation estimate
One Codex leadership team
Management profileNumber of profiles
One Codex funding detail
Funding detailFunding overview
Funding rounds3 records
Investors4 records
Funding detail is available on the Subscription and Enterprise plan.Contact sales →
One Codex M&A and investment
M&A and investmentM&A
Investments
M&A and investment is available on the Subscription and Enterprise plan.Contact sales →
Frequently asked questions about One Codex
What does One Codex do?
One Codex sells a cloud-based SaaS platform for applied microbial genomics that ingests next-generation sequencing data (FASTA/FASTQ), classifies it against the world's largest microbial reference database (80,000+ genomes), and returns reproducible taxonomic, functional, AMR, MLST, and alignment analyses. It offers tiered subscriptions (Academic freemium with 25 free analyses; Commercial with HIPAA, audit logging, custom analyses, and SLA) plus an end-to-end gut microbiome sequencing service (DNA extraction, library prep, shotgun sequencing) as an add-on.
Is One Codex a public or private company?
One Codex is a private company. It is classified as venture growth investor backed and is currently operating.
When was One Codex founded?
One Codex was founded in 2015. It employs 1 to 10 people.
Where is One Codex based?
One Codex is headquartered in San Francisco, United States, in the North America region.
How does One Codex make money?
Two revenue lines are on record. Software Platform Subscription is the primary driver. The others are microbiome Sequencing Services.
Who are One Codex's main competitors?
Direct peers on record are CosmosID, IDbyDNA (acquired by Illumina), Velsera (formerly Seven Bridges Genomics), Microbiome Insights, Diversigen (now part of OraSure Technologies) and EzBiome. Broad incumbents are DNAnexus, Qiagen Digital Insights (CLC bio) and Illumina DRAGEN. Pattern Bioscience is listed as an emerging player.
Does One Codex have an API?
Yes. One Codex API is a RESTful JSON API that powers the web application and is designed for secure storage, sharing, and reproducible analysis of microbial next-generation sequencing data. The API allows users to upload NGS data (FASTA or FASTQ files, optionally gzip-compressed), automatically determine sample composition using their metagenomic classifier and database, start new analyses including in silico panels and whole-genome alignments, and retrieve/build on analyses. The API is self-described using JSON Schema and supports authentication via API keys or OAuth. Core resources include Samples, Analyses (Classifications, Panels, Alignments), Jobs, Metadata, Tags, Documents, Webhooks/Events, and Sequencing Batches. Developer documentation is at developer.onecodex.com.
What industry is One Codex in?
One Codex's product category is Microbial Genomics Software. Its primary akta.pro industry code is HLAAAFAI, Microbiome Analytics, Sequencing & Bioinformatics Platforms, with a secondary code of HLAGAIAF, Molecular Biology & Genomics Instruments (PCR/qPCR, Sequencing, Microarrays). Its NAICS code is 513210 and its SIC code is 3826.