ecSeq Bioinformatics
ecSeq Bioinformatics GmbH, founded in 2012 in Leipzig, provides NGS bioinformatics consulting, contract research, and the Seamless NGS clinical software, supported by a 46-scientist expert network and delivered via workshops, online courses, and on-site training to academic, clinical, and pharma customers worldwide.
- Company typePrivate
- Founded2012
- HeadquartersLeipzig, Germany
- Headcount1–10
- GTM typeB2B
- OfferingServices
What ecSeq Bioinformatics does
ecSeq Bioinformatics GmbH is a privately held Leipzig-based bioinformatics company founded in 2012 by Dr. David Langenberger and Dr. Mario Fasold that delivers next-generation sequencing (NGS) data analysis services, software, and training to academic, clinical, and pharmaceutical customers. The company operates a three-part platform: (1) the Seamless NGS genetic testing software for automated NGS experiment analysis and clinical variant workflows including BRCA1/2, validated to QuIP full-score in 2017 and 2019; (2) bespoke bioinformatics consulting, contract research, and scientific due diligence executed through an expert network of 46 scientists (13 professors, 31 PhDs, 3 PhD students) covering all major NGS research fields; and (3) a training franchise of public workshops (Munich, Berlin, Leipzig, Prague, Oxford, Freising), online courses (879 EUR per seat, browser-based cloud terminal), and on-site customized courses.
Revenue is generated through one-time software licenses for Seamless NGS, per-seat workshop and online-course fees, on-site training contracts, and project-based professional services and contract research, distributed primarily through direct sales and event-driven marketing. Customers include Max-Planck Institute, Helmholtz Centre, Leipzig University Hospital, the Croatian Veterinary Institute, biotechnology and pharmaceutical companies, and a long tail of individual researchers from 37 countries. The company has no external institutional funding, has remained founder-controlled since founding, and added clinical-software capability through its 2017 merger with Seamless NGS. It maintains strategic alliances with AllGenetics, the EpiDiverse Horizon 2020 consortium, Emmanuelle Charpentier's CRISPR laboratory, the University of Leipzig bioinformatics chair, and the biosaxony cluster.
ecSeq Bioinformatics firmographics
Firmographics- Name
- ecSeq Bioinformatics
- Legal name
- ecSeq Bioinformatics GmbH
- Website
- https://ecseq.com
- Company type
- Private
- Founded year
- 2012
- Operating status
- Operating
- Headcount range
- 1–10 employees
- Short description
- ecSeq Bioinformatics GmbH, founded in 2012 in Leipzig, provides NGS bioinformatics consulting, contract research, and the Seamless NGS clinical software, supported by a 46-scientist expert network and delivered via workshops, online courses, and on-site training to academic, clinical, and pharma customers worldwide.
- Ownership category
- akta.pro rank
ecSeq Bioinformatics industry classification
Industry- Product category
- Bioinformatics Services
- NAICS
- Research and Development in Biotechnology (except Nanobiotechnology) (541714), Other Scientific and Technical Consulting Services (54169), Management, Scientific, and Technical Consulting Services (5416)
- SIC
- Services-Commercial Physical & Biological Research (8731)
- akta.pro primary industry
- Genomics & Next-Generation Sequencing (NGS) Services (HLAGANAA)
- akta.pro secondary industries
- Bioinformatics, Multi-Omics Data Analysis & Interpretation Services (HLAGANAI), Transcriptomics & Gene Expression Profiling Services (HLAGANAE)
Keywords
Where ecSeq Bioinformatics is headquartered
LocationHeadquarters
- HQ city
- Leipzig
- HQ country
- Germany
- HQ region
- Europe
Offices3 records
Markets served
ecSeq Bioinformatics business model
Business model- GTM type
- B2B
- Offering type
- Services
- Cost components
- Personnel, Operations, Marketing or Sales, Technology or R&D, Infrastructure
Revenue model
- Training and Workshops: Public workshops on NGS data analysis held in European cities and online. Covers topics including RNA-Seq, DNA-Seq, epigenetics, variant calling. Also offers on-site customized training at customer locations.
- Bioinformatics Consulting and Contract Research: Knowledge-driven NGS solutions through expert network consultation. Accompanies NGS projects from design to data analysis. Services include scientific due diligence and expert network access.
- Seamless NGS Software Licensing: Genetic testing software platform for automated NGS analysis. Sold as licensed software to diagnostic laboratories and research facilities.
Pricing tiers
| Model | Billing | Price |
|---|---|---|
| One time/ perpetual license | Pay-as-you-go | Online NGS Introduction Course - 879 EUR + VAT |
Go-to-market motion2 records
Distribution channels5 records
Marketing channels6 records
ecSeq Bioinformatics product offering
Product offeringCore offering
ecSeq Bioinformatics provides next-generation sequencing (NGS) bioinformatics solutions, including software (Seamless NGS), custom NGS software development, contract research, scientific due-diligence consulting, and access to an expert network of approximately 46 specialists. The company also delivers training through public workshops (such as the Berlin Summer School in NGS Data Analysis), on-site courses at customer locations, and self-paced online courses. Target users are academic researchers, clinical diagnostic laboratories, and pharmaceutical/biotech organizations needing NGS data analysis expertise.
Product overview
ecSeq Bioinformatics provides a comprehensive portfolio of bioinformatics solutions centered around its Seamless NGS software platform for automated genetic testing and NGS data analysis. The offering combines the Seamless NGS software product with custom software development services, knowledge-driven analysis solutions leveraging an expert network of 46+ scientists, and professional training services including public workshops, on-site courses, and the annual Berlin Summer School. Services span DNA-Seq, RNA-Seq, and Epigenetics analysis domains. The company also offers scientific due diligence and contract research services through its expert network.
Differentiator
Problem solved
Functional benefit
Products and services
- Seamless NGS Software platform for DNA and RNA NGS variant analysis, used by clinical diagnostic laboratories and research groups to run validated analysis pipelines without building them in-house.
- Berlin Summer School in NGS Data Analysis Public, in-person multi-day training program in NGS data analysis (DNA-Seq, RNA-Seq, epigenetics) for academic researchers, PhD students, and industry scientists.
- Public NGS Workshops Public, scheduled short workshops covering NGS data analysis topics, delivered in person for academic and industry participants.
- On-Site Bioinformatics Courses Customized training delivered at the customer's site (e.g., pharma, clinical labs, research institutes) covering NGS analysis workflows tailored to the host organization.
- Online Bioinformatics Course Self-paced online bioinformatics course allowing remote learners to acquire NGS data analysis skills without attending in-person workshops.
- Custom NGS Software Development Bespoke development of NGS analysis software and pipelines designed to a customer's specific research, clinical, or operational requirements.
- Knowledge-driven NGS Solutions Expert consulting service that applies ecSeq's accumulated NGS bioinformatics knowledge to solve customer-specific analysis challenges.
- Contract Research Project-based NGS data analysis research performed by ecSeq on behalf of customers, delivered as a contracted research engagement.
- Scientific Due Diligence Independent scientific assessment of NGS-based technologies and datasets to inform investment, acquisition, or partnership decisions.
- Expert Network Curated network of approximately 46 vetted NGS bioinformatics specialists that customers can engage for short- or long-term consulting projects.
- DNA-Seq Analysis Services Analysis of DNA sequencing data (whole-genome, exome, or targeted panel) delivered as a service to researchers and clinical customers.
- RNA-Seq Analysis Services Analysis of RNA sequencing data, including differential expression, transcript quantification, and related workflows, delivered as a service.
- Epigenetics Analysis Services Analysis of epigenomics NGS data (e.g., methylation, histone-related assays), leveraging EpiDiverse-derived pipeline components.
Quantifiable outcome
- 20/20 points in QuIP round-robin test for BRCA1/2 analysis
- +2 more outcomes
Companies that use ecSeq Bioinformatics
Customer profileNamed customers6 records
Segments4 records
Ideal customer profiles3 records
ecSeq Bioinformatics technology and API
TechnologyTechnology focussed Yes
API detail
- Has API
- No
- API docs
- API detail
Core technology
AI maturity
App detail
Feature4 records
ecSeq Bioinformatics partnerships and signals
Strategic signalPartnerships
Eight partnerships are on record, tiered core and minor.
- Seamless NGScoreMerger with Seamless NGS in 2017. Seamless NGS developed unique portfolio of cutting-edge NGS software solutions used in diagnostic laboratories and research facilities, specializing in high-performance analyses of DNA, RNA and epigenetic markers for diseases such as cancer.
- AllGeneticscorePartnership to offer end-to-end analysis solutions for RNA-Seq, small-RNA-Seq, and DNA-seq including sample preparation, sequencing, and extensive bioinformatics data analysis.
- Fraunhofer IMEminorJoint project with Fraunhofer Institute for Molecular Biology and Applied Ecology to generate high-resolution genetic map of Russian dandelion (Taraxacum koksaghyz) for natural rubber production. Project funded by BMBF.
- Emmanuelle Charpentier's LaboratorycoreCooperation agreement signed with Prof. Dr. Emmanuelle Charpentier's laboratory at Max Planck Unit for the Science of Pathogens. Prof. Charpentier is known for deciphering CRISPR-Cas9 mechanisms.
- biosaxonyminorMember of biosaxony life science cluster in Saxony. Organization hosts projects with participating scientists and companies, provides services and know-how, and aims to develop the biotechnology and life sciences sector.
- EpiDiverse ConsortiumcoreEU Horizon 2020 Marie Skłodowska-Curie Innovative Training Network (ITN). ecSeq supervises one ESR, provides NGS trainings to all 15 ESRs, and operates EpiDiverse high-performance computer clusters. Network involves 12 partners from academia, non-profit and industry in Netherlands, Germany, France, Spain, Czech Republic, Italy and Austria.
- University of Leipzig - Chair for BioinformaticscoreClose cooperation with Chair for Bioinformatics at University of Leipzig (Prof. Dr. Peter F. Stadler). Enables academic-industry collaboration on research projects.
- SEQmeminorPartnership with SEQme for Prague Summer School on Next-Gen Seq Data Analysis. SEQme organizes the workshop in cooperation with ecSeq Bioinformatics.
Scale indicators4 records
Recent moves7 records
Expansion highlights6 records
ecSeq Bioinformatics competitors and assessment
Company assessmentDirect peers
- Eagle Genomics: Bioinformatics platform and services for microbiome and multi-omics data analysis. Comparable to ecSeq in combining expert-driven analysis with proprietary software, focused on life sciences R&D customers.
- DNAnexus: Cloud-based biomedical informatics platform for NGS data management and analysis. Targets clinical labs, pharma, and research institutions — the same buyers as ecSeq — but with a global SaaS delivery model rather than consulting.
- Congenica: Clinical genomics data analysis platform for rare disease and hereditary cancer interpretation. Directly competes with Seamless NGS in diagnostic NGS reporting and clinical decision support.
- Fabric Genomics (formerly Omicia): Clinical NGS interpretation platform for hereditary disease and oncology. Competes head-to-head with Seamless NGS in clinical variant analysis and diagnostic reporting workflows.
Regional players
- Charité / Berlin Institute of Health Bioinformatics Service Units: Academic bioinformatics core facilities offering NGS analysis services and training to German and European research institutions. Competes with ecSeq's workshops and consulting, especially in the DACH region.
Broad incumbents
- Sophia Genetics: Provides AI-driven NGS interpretation for hospitals and clinical labs across multiple disease areas. Directly comparable to Seamless NGS for clinical variant reporting, with a much larger global install base.
- QIAGEN Digital Insights (formerly QIAGEN Bioinformatics): QIAGEN's bioinformatics arm offers enterprise-scale NGS analysis, variant interpretation, and clinical decision support. Far larger and broader than ecSeq, but overlaps on clinical NGS interpretation and somatic/germline variant analysis workflows.
- BlueBee (acquired by Illumina): Cloud bioinformatics platform for NGS data analysis, now part of Illumina. Comparable delivery model (cloud-based analysis) and customer base (clinical and research labs) as ecSeq's Seamless NGS platform.
Emerging players
- Seqera Labs (Nextflow): Provides Nextflow-based pipeline orchestration and cloud infrastructure for bioinformatics workflows. Adjacent to ecSeq's analysis pipelines business (e.g., EpiDiverse WGBS/DMR) and increasingly relevant as labs standardize on reproducible workflow platforms.
Others
- Galaxy Project (Penn State, Johns Hopkins, etc.): Open-source web-based platform for NGS data analysis with associated training workshops. Competes with ecSeq's training and analysis infrastructure, especially for academic users comfortable with open-source tools.
Market position
Strengths4 records
Weaknesses4 records
Competitive moat4 records
Key risks7 records
Key highlights7 records
Customer concentration
ecSeq Bioinformatics social profiles
Digital presenceecSeq Bioinformatics financial estimates
Financial estimateRevenue estimate
Valuation estimate
ecSeq Bioinformatics leadership team
Management profileNumber of profiles
Profiles3 records
ecSeq Bioinformatics subsidiaries and ownership
Company hierarchySubsidiaries1 record
ecSeq Bioinformatics funding detail
Funding detailFunding overview
Funding rounds
Investors
Funding detail is available on the Subscription and Enterprise plan.Contact sales →
ecSeq Bioinformatics M&A and investment
M&A and investmentM&A
Investments
M&A and investment is available on the Subscription and Enterprise plan.Contact sales →
Frequently asked questions about ecSeq Bioinformatics
What does ecSeq Bioinformatics do?
ecSeq Bioinformatics provides next-generation sequencing (NGS) bioinformatics solutions, including software (Seamless NGS), custom NGS software development, contract research, scientific due-diligence consulting, and access to an expert network of approximately 46 specialists. The company also delivers training through public workshops (such as the Berlin Summer School in NGS Data Analysis), on-site courses at customer locations, and self-paced online courses. Target users are academic researchers, clinical diagnostic laboratories, and pharmaceutical/biotech organizations needing NGS data analysis expertise.
Is ecSeq Bioinformatics a public or private company?
ecSeq Bioinformatics is a private company. It is classified as founder individual operated bootstrapped and is currently operating.
When was ecSeq Bioinformatics founded?
ecSeq Bioinformatics was founded in 2012. It employs 1 to 10 people.
Where is ecSeq Bioinformatics based?
ecSeq Bioinformatics is headquartered in Leipzig, Germany, in the Europe region.
How does ecSeq Bioinformatics make money?
Three revenue lines are on record. Training and Workshops are the primary driver. The others are bioinformatics Consulting and Contract Research and seamless NGS Software Licensing.
Who are ecSeq Bioinformatics's main competitors?
Direct peers on record are Eagle Genomics, DNAnexus, Congenica and Fabric Genomics (formerly Omicia). Charité / Berlin Institute of Health Bioinformatics Service Units is listed as a regional player. Broad incumbents are Sophia Genetics, QIAGEN Digital Insights (formerly QIAGEN Bioinformatics) and BlueBee (acquired by Illumina). Seqera Labs (Nextflow) is listed as an emerging player. Galaxy Project (Penn State, Johns Hopkins, etc.) is listed as an others.
Does ecSeq Bioinformatics have an API?
No public API is recorded for ecSeq Bioinformatics.
What industry is ecSeq Bioinformatics in?
ecSeq Bioinformatics's product category is Bioinformatics Services. Its primary akta.pro industry code is HLAGANAA, Genomics & Next-Generation Sequencing (NGS) Services, with a secondary code of HLAGANAI, Bioinformatics, Multi-Omics Data Analysis & Interpretation Services. Its NAICS code is 541714 and its SIC code is 8731.