NDEx
NDEx operates NDEx 3, a network data exchange platform for sharing, searching, and analyzing biological network data, serving biological and biomedical research communities.
- Company typePrivate
- Founded2013
- HeadquartersSan Diego, United States
- Headcount1–10
- GTM typeB2B
- OfferingSoftware
What NDEx does
The commercial posture of NDEx is not discernible from the available data: no pricing model, no revenue model mechanics, no customer segments, no go-to-market motion, no funding history, no headcount, and no management team information are present in the source material. The product's positioning as a public-facing biological data exchange (accessed via a standard .org domain) is consistent with either a non-commercial research utility, a grant-funded scientific resource, or a thinly commercialized niche platform — but the evidence does not support distinguishing between these. The absence of any disclosed business model is itself a material finding for an investment audience, as it limits the basis for revenue, valuation, or growth assessment.
NDEx firmographics
Firmographics- Name
- NDEx
- Website
- https://ndexbio.org
- Company type
- Private
- Founded year
- 2013
- Operating status
- Operating
- Headcount range
- 1–10 employees
- Short description
- NDEx operates NDEx 3, a network data exchange platform for sharing, searching, and analyzing biological network data, serving biological and biomedical research communities.
- Ownership category
- akta.pro rank
Where NDEx is headquartered
LocationHeadquarters
- HQ city
- San Diego
- HQ country
- United States
- HQ region
- North America
Markets served
NDEx business model
Business model- GTM type
- B2B
- Offering type
- Software
NDEx product offering
Product offeringCore offering
NDEx 3 is a network data exchange platform designed for sharing, searching, and analyzing biological network data. It serves as a centralized online platform where biological network datasets can be uploaded, queried, and explored by researchers and organizations working in network biology and bioinformatics.
Differentiator
Problem solved
Functional benefit
Products and services
- NDEx 3 NDEx 3 is a network data exchange platform for sharing, searching, and analyzing biological network data. It is designed for researchers, computational biologists, and organizations working with biological networks such as protein-protein interaction networks, gene regulatory networks, and metabolic pathways.
Companies that use NDEx
Customer profileIdeal customer profiles1 record
NDEx technology and API
TechnologyTechnology focussed Yes
API detail
- Has API
- No
- API docs
- API detail
Core technology
AI maturity
App detail
NDEx partnerships and signals
Strategic signalRecent moves1 record
NDEx competitors and assessment
Company assessmentDirect peers
- IntAct: IntAct is EMBL-EBI's open-source molecular interaction database with curation, search, and network-export capabilities. It overlaps NDEx on data deposition, retrieval, and reuse for molecular interaction networks.
- Reactome: Reactome is an open-source, curated pathway database that supports search, analysis, and data exchange of biological pathways. It is directly comparable to NDEx's network-centric share/search/analyze model within the broader pathway-and-network data ecosystem.
- GeneMANIA: GeneMANIA is a network-based gene function prediction platform that builds and queries functional association networks. It shares NDEx's network-centric approach to biological data sharing, searching, and analysis.
- STRING (ELIXIR): STRING is a widely used database of known and predicted protein-protein interactions, with built-in search, enrichment, and network-analysis features. It competes head-to-head with NDEx in serving researchers who need to query and analyze biological interaction networks.
- Pathway Commons: Pathway Commons aggregates biological pathway and interaction data from multiple sources into a unified searchable resource. It is functionally similar to NDEx as a network data aggregation and access point.
- BioGRID: BioGRID is a curated biological interaction database covering protein, genetic, and chemical interactions. Like NDEx, it is a repository-and-search platform for biological networks used by the same systems-biology research audience.
- Cytoscape: Cytoscape is an open-source network visualization and analysis platform in systems biology that tightly integrates with biological network repositories including NDEx. It is the most directly comparable ecosystem player, sharing both the biological-network focus and the share/search/analyze workflow pattern.
- KEGG: KEGG is a long-established integrated database of biological pathways, genomes, and chemical information. It competes with NDEx for the same researchers looking to query and analyze biological networks, particularly pathways.
- OmniPath: OmniPath is a comprehensive molecular interaction database combining signaling, pathway, and regulatory interactions with web-based querying and download. It targets the same biological-network-research workflow as NDEx.
- WikiPathways: WikiPathways is an open, community-curated biological pathway database with download, search, and analysis features. It serves the same biological-network data audience as NDEx and is a credible open-data alternative.
Market position
Strengths3 records
Weaknesses3 records
Competitive moat2 records
Key risks2 records
Key highlights3 records
Customer concentration
NDEx social profiles
Digital presenceNDEx financial estimates
Financial estimateRevenue estimate
Valuation estimate
NDEx leadership team
Management profileNumber of profiles
NDEx funding detail
Funding detailFunding overview
Funding rounds
Investors
Funding detail is available on the Subscription and Enterprise plan.Contact sales →
NDEx M&A and investment
M&A and investmentM&A
Investments
M&A and investment is available on the Subscription and Enterprise plan.Contact sales →
Frequently asked questions about NDEx
What does NDEx do?
NDEx 3 is a network data exchange platform designed for sharing, searching, and analyzing biological network data. It serves as a centralized online platform where biological network datasets can be uploaded, queried, and explored by researchers and organizations working in network biology and bioinformatics.
When was NDEx founded?
NDEx was founded in 2013. It employs 1 to 10 people.
Where is NDEx based?
NDEx is headquartered in San Diego, United States, in the North America region.
Who are NDEx's main competitors?
Direct peers on record are IntAct, Reactome, GeneMANIA, STRING (ELIXIR), Pathway Commons, BioGRID, Cytoscape, KEGG, OmniPath and WikiPathways.
Does NDEx have an API?
No public API is recorded for NDEx.