MetaboHUB
MetaboHUB is France's national research infrastructure for metabolomics and fluxomics, integrating NMR, mass spectrometry, robotic automation, and proprietary bioinformatics tools across 6 regional nodes and 16 sites to serve academic and industrial clients.
- Company typePrivate
- Founded2013
- HeadquartersToulouse, France
- Headcount1–10
- GTM typeB2B
- OfferingServices
What MetaboHUB does
MetaboHUB is a French national research infrastructure for metabolomics and fluxomics, established in 2013 under the Investissements d'Avenir program and operated as a consortium of nine French public research institutions led by INRAE, alongside CEA, CNRS, INSERM, INSA Toulouse, and five universities. It operates 6 regional nodes and 16 sites across France, integrating 67 mass spectrometers, 15 NMR spectrometers (300-800 MHz including an 800 MHz cryoplatform), and 10 robotic sample preparation systems to deliver 58 services across 9 application domains spanning metabolite profiling to metabolic flux analysis. Core technical capabilities include NMR spectroscopy, GC-MS, LC-MS, high-resolution mass spectrometry, dissolution-DNP for NMR sensitivity enhancement, ion mobility spectroscopy, and microfluidic tools for single-cell metabolomics.
The infrastructure serves both academic researchers — including large national and international cohort studies (Constances, NuAge) — and industrial partners across pharmaceutical, biotechnology, agrifood, and clinical research sectors, with disclosed industrial customers including Sanofi Pasteur, Sanofi Aventis, Evotec, Deinove, Enobraq, and Toulouse White Biotechnology. MetaboHUB complements its analytical services with four proprietary bioinformatics tools developed largely in collaboration with the French Bioinformatics Institute (IFB): Workflow4Metabolomics (W4M, Galaxy-based), MetExplore for genome-scale metabolic network analysis, NMRProcFlow for 1D NMR processing, and the PeakForest spectral reference database. Service access is managed through the MAMA web application portal.
Revenue derives from three streams: public research infrastructure grants via the Agence Nationale de la Recherche under the France 2030 program (ANR-11-INBS-0010, ANR-21-ESRE-0035, ANR-24-INBS-0012), fee-based analytical services, and training programs (Hands-On Metabolomics, Workflow4Experimenters, MetExplore) priced from €670 to €5,000 per participant depending on academic versus industrial status. Multiple nodes hold ISO 9001:2015 certification and IBiSA labeling, reinforcing quality positioning. Strategic direction is set by Director Fabien Jourdan (INRAE) with Deputy Directors from CEA and CNRS, and current focus is on the MetEx+ project (2020-2025) targeting data interoperability, single-cell metabolomics, and clinical fluxomics.
MetaboHUB firmographics
Firmographics- Name
- MetaboHUB
- Legal name
- MetaboHUB Centre INRAE Toulouse
- Website
- https://metabohub.fr
- Company type
- Private
- Founded year
- 2013
- Operating status
- Operating
- Headcount range
- 1–10 employees
- Short description
- MetaboHUB is France's national research infrastructure for metabolomics and fluxomics, integrating NMR, mass spectrometry, robotic automation, and proprietary bioinformatics tools across 6 regional nodes and 16 sites to serve academic and industrial clients.
- Ownership category
- akta.pro rank
MetaboHUB industry classification
Industry- Product category
- Metabolomics Research Services
- NAICS
- Research and Development in Biotechnology (except Nanobiotechnology) (541714), Scientific Research and Development Services (5417), Medical Laboratories (621511), Medical and Diagnostic Laboratories (6215), Analytical Laboratory Instrument Manufacturing (334516), Research and Development in the Physical, Engineering, and Life Sciences (54171)
- SIC
- Services-Commercial Physical & Biological Research (8731), Services-Medical Laboratories (8071), Laboratory Analytical Instruments (3826), In Vitro & In Vivo Diagnostic Substances (2835)
- akta.pro primary industry
- Metabolomics & Lipidomics Services (HLAGANAG)
- akta.pro secondary industries
- Proteomics & Mass Spectrometry Services (HLAGANAB), Bioinformatics, Multi-Omics Data Analysis & Interpretation Services (HLAGANAI), Bioinformatics & Multi-omics Analysis Software (HLAGAJAD), AI/ML Platforms for Drug Discovery & Experiment Optimization (HLAGAJAO), Material Characterization & Spectroscopy (NMR/FTIR/MS) (HLAGADAK), Genomic & Multi-Omic Biomarkers (NGS panels, transcriptomics, proteomics, metabolomics) (HLAAAMAJ)
Keywords
Where MetaboHUB is headquartered
LocationHeadquarters
- HQ city
- Toulouse
- HQ country
- France
- HQ region
- Europe
Offices9 records
Markets served
MetaboHUB business model
Business model- GTM type
- B2B
- Offering type
- Services
- Cost components
- Personnel, Technology or R&D, Operations, Infrastructure, Supply Chain, Marketing or Sales
Revenue model
- Public Research Infrastructure Funding: MetaboHUB is funded through the French Investments for the Future program (Investissements d'Avenir) managed by ANR under France 2030. Initial EQUIPEX project (2013-2024) followed by EQUIPEX+ extension (MetaboHUB 2.0 / MetEx+).
- Analytical Services: Provides analytical services to academic researchers and industrial partners in metabolomics and fluxomics, including sample analysis, method development, and data processing.
- Training and Education: Fee-based training programs including hands-on metabolomics courses, Workflow4Experimenters workshops, and specialized training on infrastructure tools.
Pricing tiers
| Model | Billing | Price |
|---|---|---|
| Other | Pay-as-you-go | Hands-On Metabolomics Training Week - Autumn 2026 |
| Other | Pay-as-you-go | Workflow4Experimenters Training |
| Other | Pay-as-you-go | MetExplore Personal Training |
| Other | Pay-as-you-go | Initiation à la Métabolomique |
| Other | Pay-as-you-go | Métabolomique quantitative par spectrométrie de masse |
| Other | Pay-as-you-go | Extraction et analyse des phytohormones par MS |
| Other | Pay-as-you-go | Lipidomique Training |
Go-to-market motion2 records
Distribution channels3 records
Marketing channels8 records
MetaboHUB product offering
Product offeringCore offering
MetaboHUB is the French national research infrastructure for metabolomics and fluxomics, providing 58 analytical services across 9 application domains through 6 regional nodes and 16 sites. The infrastructure combines NMR spectroscopy, mass spectrometry (GC-MS, LC-MS, HRMS), and high-throughput robotic sample preparation with proprietary bioinformatics tools (W4M, MetExplore, NMRProcFlow, PeakForest). Services include analytical sample processing, method development, bioinformatics analysis, and training programs for academic researchers and industrial partners in health, nutrition, agriculture, environment, and biotechnology.
Product overview
MetaboHUB is a French national infrastructure for metabolomics and fluxomics, created in 2013 under the Investments for the Future program. The infrastructure operates as a multi-site platform offering analytical services through 6 regional nodes (MTH-MetaToul, MTH-IDF, MTH-Bordeaux, MTH-Clermont, MTH-Grand-Ouest, MTH-Tours) across 16 sites. The core portfolio includes: (1) MAMA - the web-based service access portal for project management; (2) eMetaboHUB - the bioinformatics tools hub featuring Workflow4Metabolomics (W4M), MetExplore, and NMRProcFlow for data processing and analysis; (3) MetEx+ - the 2.0 upgrade project focused on advanced capabilities including single-cell metabolomics and clinical fluxomics; and (4) direct analytical services using 15 NMR spectrometers and 67 mass spectrometers with robotic automation. The infrastructure serves academic researchers and industry partners across health, nutrition, agriculture, environment, and biotechnology sectors.
Differentiator
Problem solved
Functional benefit
Brands
- MetEx+: MetaboHUB 2.0 Equipex plus project focused on data interoperability, single cell metabolomics, and whole body fluxomics
- Workflow4Metabolomics (W4M)
- MAMA
Products and services
- MetaboHUB Analytical Services
- MAMA (MetaboHUB Analyses Manager)
- eMetaboHUB
- MetaboHUB Training Services
Quantifiable outcome
- 20-fold increase in strain/condition throughput for fluxomics analysis through automation
- +2 more outcomes
Companies that use MetaboHUB
Customer profileNamed customers8 records
Segments6 records
Ideal customer profiles3 records
MetaboHUB technology and API
TechnologyTechnology focussed Yes
API detail
- Has API
- No
- API docs
- API detail
Core technology
AI maturity
App detail
AI capability6 records
Feature8 records
MetaboHUB partnerships and signals
Strategic signalPartnerships
Seven partnerships are on record, tiered core and minor.
- Clinical Investigation Center at Toulouse HospitalscoreCollaboration for clinical fluxomics infrastructure enabling whole-body metabolism investigation in patients for precision medicine. All clinical setups for infusion experiments and clamp experiments established in compliance with ethical regulations under Pr. P. Gourdy's direction.
- French Bioinformatics Institute (IFB)coreCo-development of FAIR methods and computational tools for metabolomics and fluxomics. Joint training initiatives including Workflow4Experimenters program using Galaxy framework.
- MetagenopolisminorIndustrial demonstrator partnership in gut microbiome and metabolomics research.
- Toulouse White Biotechnology (TWB)corePre-industrial demonstrator facilitating translation of novel metabolomics and fluxomics methods to industrial biotechnology projects including THANAPLAST, CARBOYEAST, SYNTHOL.
- IBISBA (Industrial Biotechnology Innovation and Scale Up Centre)minorPartnership for industrial biotechnology translation and scale-up of metabolic analysis methods.
- Réseau Français de Métabolomique et Fluxomique (RFMF)coreMetaboHUB leads community-structuring activities in close connection with the national metabolomics and fluxomics society. Joint training and knowledge dissemination initiatives.
- RFMF (Workflow4Experimenters training)coreJoint training delivery for Workflow4Experimenters courses with preferential pricing for RFMF members.
Scale indicators8 records
Recent moves8 records
Expansion highlights6 records
MetaboHUB competitors and assessment
Company assessmentDirect peers
- Metabolon: Largest commercial metabolomics CRO globally, offering untargeted metabolomics profiling services to pharma, biotech and academic clients. Direct competitor for MetaboHUB's industrial service line, with global reach and stronger commercial packaging.
- Biocrates Life Sciences: Commercial metabolomics company specializing in targeted quantitative metabolomics kits and services. Competes directly with MetaboHUB's targeted profiling capabilities for pharma and academic customers, with established commercial infrastructure in Europe and the US.
- Phenome Centre Birmingham: UK national NMR metabolomics phenotyping centre serving large population cohorts. Closest functional analog to MetaboHUB's cohort phenotyping work, with comparable academic-service model and equipment footprint.
- Creative Proteomics: US-based CRO offering metabolomics, proteomics and bioinformatics services to academic and industrial clients. Direct service-model competitor, particularly for LC-MS and GC-MS-based untargeted metabolomics.
- West Coast Metabolomics Center (UC Davis): US NIH-funded metabolomics core providing untargeted LC-MS services and bioinformatics to academic and industry clients. Closest US public-infrastructure analog, comparable service portfolio and federal funding model.
- Human Metabolome Technologies (HMT): Japan-based metabolomics service provider using CE-MS and LC-MS for targeted and untargeted profiling. Comparable service model serving pharma and academic clients, with strong presence in Asia.
Broad incumbents
- Eurofins Scientific: Global testing services conglomerate with food, pharma and clinical testing lines. Provides adjacent laboratory services to industrial and clinical clients that overlap with MetaboHUB's analytical service offerings.
- Thermo Fisher Scientific: Major life sciences instrumentation and CRO provider (Orbitrap, Q-Exactive) whose mass spectrometry platforms underpin much of MetaboHUB's stack, and which offers competing fee-for-service metabolomics through its PPD clinical research business.
- Bruker Corporation: Major analytical instrument manufacturer (NMR, MS, ion mobility) that supplies much of MetaboHUB's hardware and offers adjacent service contracts. Strategic upstream partner and potential competitor for industrial services built on its own platforms.
Emerging players
- MetaboLights (EMBL-EBI): Open-access metabolomics database and reference infrastructure hosted at EMBL-EBI. Complementary rather than competitive — overlaps with MetaboHUB's bioinformatics/data stewardship mission and shares ELIXIR alignment, but does not provide fee-based analytical services.
Market position
Strengths5 records
Weaknesses5 records
Competitive moat5 records
Key risks6 records
Key highlights7 records
Customer concentration
MetaboHUB social profiles
Digital presenceMetaboHUB compliance and trust
Trust signalCompliance3 records
MetaboHUB financial estimates
Financial estimateRevenue estimate
Valuation estimate
MetaboHUB leadership team
Management profileNumber of profiles
Profiles3 records
MetaboHUB subsidiaries and ownership
Company hierarchySubsidiaries6 records
MetaboHUB funding detail
Funding detailFunding overview
Funding rounds
Investors
Funding detail is available on the Subscription and Enterprise plan.Contact sales →
MetaboHUB M&A and investment
M&A and investmentM&A
Investments
M&A and investment is available on the Subscription and Enterprise plan.Contact sales →
Frequently asked questions about MetaboHUB
What does MetaboHUB do?
MetaboHUB is the French national research infrastructure for metabolomics and fluxomics, providing 58 analytical services across 9 application domains through 6 regional nodes and 16 sites. The infrastructure combines NMR spectroscopy, mass spectrometry (GC-MS, LC-MS, HRMS), and high-throughput robotic sample preparation with proprietary bioinformatics tools (W4M, MetExplore, NMRProcFlow, PeakForest). Services include analytical sample processing, method development, bioinformatics analysis, and training programs for academic researchers and industrial partners in health, nutrition, agriculture, environment, and biotechnology.
Is MetaboHUB a public or private company?
MetaboHUB is a private company. It is classified as state government owned and is currently operating.
When was MetaboHUB founded?
MetaboHUB was founded in 2013. It employs 1 to 10 people.
Where is MetaboHUB based?
MetaboHUB is headquartered in Toulouse, France, in the Europe region.
How does MetaboHUB make money?
Three revenue lines are on record. Public Research Infrastructure Funding is the primary driver. The others are analytical Services and training and Education.
Who are MetaboHUB's main competitors?
Direct peers on record are Metabolon, Biocrates Life Sciences, Phenome Centre Birmingham, Creative Proteomics, West Coast Metabolomics Center (UC Davis) and Human Metabolome Technologies (HMT). Broad incumbents are Eurofins Scientific, Thermo Fisher Scientific and Bruker Corporation. MetaboLights (EMBL-EBI) is listed as an emerging player.
Does MetaboHUB have an API?
No public API is recorded for MetaboHUB.
What industry is MetaboHUB in?
MetaboHUB's product category is Metabolomics Research Services. Its primary akta.pro industry code is HLAGANAG, Metabolomics & Lipidomics Services, with a secondary code of HLAGANAB, Proteomics & Mass Spectrometry Services. Its NAICS code is 541714 and its SIC code is 8731.